PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_2E5380A2A.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 181aa    MW: 20134 Da    PI: 10.0612
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_2E5380A2A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.53.7e-30297187
                           EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81
                           f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv++++L +gD++v
  Traes_3AS_2E5380A2A.1  2 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtpetTTTTGNGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKDLAAGDSIV 91
                           89*************************99877766444458999********************************************** PP

                           EEE-SS CS
                     B3 82 Fkldgr 87
                           F+ +  
  Traes_3AS_2E5380A2A.1 92 FSCSAY 97
                           *96543 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.40E-26192No hitNo description
Gene3DG3DSA:2.40.330.104.4E-371111IPR015300DNA-binding pseudobarrel domain
PfamPF023627.7E-282100IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-292108IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-212110IPR003340B3 DNA binding domain
PROSITE profilePS5086313.3942111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
LFEKAVTPSD VGKLNRLVVP KQHAEKHFPL KRTPETTTTT GNGVLLNFED GEGKVWRFRY  60
SYWNSSQSYV LTKGWSRFVR EKDLAAGDSI VFSCSAYGQE KQFFIDCKKN TTVDGGKSAS  120
PLPVVETVKG EQVRVVRLFG VDIAGVKRVR AAMAEQGPPE LFQRQCVTHG RHSPALGSFV  180
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-48111413121DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0095110.0BT009511.1 Triticum aestivum clone wr1.pk0094.d12:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693577.15e-77PREDICTED: AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ0DXB17e-75Y2641_ORYSJ; B3 domain-containing protein Os02g0764100
TrEMBLW5CJE11e-133W5CJE1_WHEAT; Uncharacterized protein
STRINGMLOC_56567.11e-114(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.25e-53related to ABI3/VP1 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]